Research

2023

• Day TG., Kainz B., Razavi R., Simpson J.:
  RE: Wang et al. Diagnosis of fetal total anomalous pulmonary venous connection based on the post-left atrium space ratio using artificial intelligence
  In: Prenatal Diagnosis (2023)
  ISSN: 0197-3851
  DOI: 10.1002/pd.6287
  BibTeX: Download
• Zimmer VA., Gomez A., Skelton E., Wright R., Wheeler G., Deng S., Ghavami N., Lloyd K., Matthew J., Kainz B., Rueckert D., Hajnal JV., Schnabel JA.:
  Placenta segmentation in ultrasound imaging: Addressing sources of uncertainty and limited field-of-view
  In: Medical Image Analysis 83 (2023), Article No.: 102639
  ISSN: 1361-8415
  DOI: 10.1016/j.media.2022.102639
  BibTeX: Download

2022

• Baugh M., Tan J., Vlontzos A., Müller J., Kainz B.:
  nnOOD: A Framework for Benchmarking Self-supervised Anomaly Localisation Methods
  4th Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2022, held in conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, SGP, 18/09/2022 - 18/09/2022)
  In: Carole H. Sudre, Carole H. Sudre, Christian F. Baumgartner, Adrian Dalca, Adrian Dalca, William M. Wells III, Chen Qin, Ryutaro Tanno, Koen Van Leemput, Koen Van Leemput, William M. Wells III (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
  DOI: 10.1007/978-3-031-16749-2_10
  BibTeX: Download
• Gomez A., Zimmer VA., Wheeler G., Toussaint N., Deng S., Wright R., Skelton E., Matthew J., Kainz B., Hajnal J., Schnabel J.:
  PRETUS: A plug-in based platform for real-time ultrasound imaging research
  In: SoftwareX 17 (2022), Article No.: 100959
  ISSN: 2352-7110
  DOI: 10.1016/j.softx.2021.100959
  BibTeX: Download
• Grzech D., Azampour MF., Glocker B., Schnabel J., Navab N., Kainz B., Folgoc LL.:
  A variational Bayesian method for similarity learning in non-rigid image registration
  2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2022 (New Orleans, LA, 19/06/2022 - 24/06/2022)
  In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition 2022
  DOI: 10.1109/CVPR52688.2022.00022
  BibTeX: Download
• Lebbos C., Barcroft J., Tan J., Müller J., Baugh M., Vlontzos A., Saso S., Kainz B.:
  Adnexal Mass Segmentation with Ultrasound Data Synthesis
  3rd International Workshop of Advances in Simplifying Medical Ultrasound, ASMUS 2022, held in Conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, SGP, 18/09/2022 - 18/09/2022)
  In: Stephen Aylward, J. Alison Noble, Yipeng Hu, Su-Lin Lee, Zachary Baum, Zhe Min (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
  DOI: 10.1007/978-3-031-16902-1_11
  BibTeX: Download
• Li L., Ma Q., Li Z., Ouyang C., Zhang W., Price A., Kyriakopoulou V., Grande LC., Makropoulos A., Hajnal J., Rueckert D., Kainz B., Alansary A.:
  Fetal Cortex Segmentation with Topology and Thickness Loss Constraints
  1st Workshop on Ethical and Philosop Issues in Med Imaging (EPIMI) / 12th Int Workshop on Multimodal Learning and Fus Across Scales for Clin Decis Support (ML-CDS) / 2nd Int Workshop on Topol Data Anal for Biomed Imaging (TDA4BiomedicalImaging) (Singapore, SINGAPORE)
  In: ETHICAL AND PHILOSOPHICAL ISSUES IN MEDICAL IMAGING, MULTIMODAL LEARNING AND FUSION ACROSS SCALES FOR CLINICAL DECISION SUPPORT, AND TOPOLOGICAL DATA ANALYSIS FOR BIOMEDICAL IMAGING, EPIMI 2022, ML-CDS 2022, TDA4BIOMEDICALIMAGING, CHAM: 2022
  DOI: 10.1007/978-3-031-23223-7_11
  BibTeX: Download
• Liu T., Meng Q., Huang JJ., Vlontzos A., Rueckert D., Kainz B.:
  Video Summarization Through Reinforcement Learning with a 3D Spatiooral U-Net
  In: IEEE Transactions on Image Processing 31 (2022), p. 1573-1586
  ISSN: 1057-7149
  DOI: 10.1109/TIP.2022.3143699
  BibTeX: Download
• Ouyang C., Wang S., Chen C., Li Z., Bai W., Kainz B., Rueckert D.:
  Improved Post-hoc Probability Calibration for Out-of-Domain MRI Segmentation
  4th Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2022, held in conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, 18/09/2022 - 18/09/2022)
  In: Carole H. Sudre, Carole H. Sudre, Christian F. Baumgartner, Adrian Dalca, Adrian Dalca, William M. Wells III, Chen Qin, Ryutaro Tanno, Koen Van Leemput, Koen Van Leemput, William M. Wells III (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
  DOI: 10.1007/978-3-031-16749-2_6
  BibTeX: Download
• Reynaud H., Vlontzos A., Dombrowski M., Gilligan Lee C., Beqiri A., Leeson P., Kainz B.:
  D’ARTAGNAN: Counterfactual Video Generation
  25th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2022 (Singapore, 18/09/2022 - 22/09/2022)
  In: Linwei Wang, Qi Dou, P. Thomas Fletcher, Stefanie Speidel, Shuo Li (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
  DOI: 10.1007/978-3-031-16452-1_57
  BibTeX: Download
• Schlüter HM., Tan J., Hou B., Kainz B.:
  Natural Synthetic Anomalies for Self-supervised Anomaly Detection and Localization
  17th European Conference on Computer Vision, ECCV 2022 (Tel Aviv, 23/10/2022 - 27/10/2022)
  In: Shai Avidan, Gabriel Brostow, Moustapha Cissé, Giovanni Maria Farinella, Tal Hassner (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
  DOI: 10.1007/978-3-031-19821-2_27
  BibTeX: Download
• Tan J., Kart T., Hou B., Batten J., Kainz B.:
  MetaDetector: Detecting Outliers by Learning to Learn from Self-supervision
  24th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2021 (Strasbourg, FRA, 27/09/2021 - 01/10/2021)
  In: Marc Aubreville, David Zimmerer, Mattias Heinrich (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
  DOI: 10.1007/978-3-030-97281-3_18
  BibTeX: Download
• Zimmerer D., Full PM., Isensee F., Jaeger P., Adler T., Petersen J., Koehler G., Ross T., Reinke A., Kascenas A., Jensen BS., O'Neil AQ., Tan J., Hou B., Batten J., Qiu H., Kainz B., Shvetsova N., Fedulova I., Dylov D., Yu B., Zhai J., Hu J., Si R., Zhou S., Wang S., Li X., Chen X., Zhao Y., Marimont SN., Tarroni G., Saase V., Maier-Hein L., Maier-Hein K.:
  MOOD 2020: A Public Benchmark for Out-of-Distribution Detection and Localization on Medical Images
  In: IEEE Transactions on Medical Imaging 41 (2022), p. 2728-2738
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2022.3170077
  BibTeX: Download

2021

• Budd S., Day TG., Simpson JM., Lloyd K., Matthew J., Skelton E., Razavi R., Kainz B.:
  Can Non-specialists Provide High Quality Gold Standard Labels in Challenging Modalities?
  Springer Science and Business Media Deutschland GmbH, 2021
  ISBN: 9783030877217
  DOI: 10.1007/978-3-030-87722-4_23
  BibTeX: Download
• Budd S., Robinson EC., Kainz B.:
  A survey on active learning and human-in-the-loop deep learning for medical image analysis
  In: Medical Image Analysis 71 (2021), Article No.: 102062
  ISSN: 1361-8415
  DOI: 10.1016/j.media.2021.102062
  BibTeX: Download
• Budd S., Sinclair M., Day TG., Vlontzos A., Tan J., Liu T., Matthew J., Skelton E., Simpson JM., Razavi R., Glocker B., Rueckert D., Robinson EC., Kainz B.:
  Detecting Hypo-plastic Left Heart Syndrome in Fetal Ultrasound via Disease-Specific Atlas Maps
  Springer Science and Business Media Deutschland GmbH, 2021
  ISBN: 9783030872335
  DOI: 10.1007/978-3-030-87234-2_20
  BibTeX: Download
• Day TG., Kainz B., Hajnal J., Razavi R., Simpson JM.:
  Artificial intelligence, fetal echocardiography, and congenital heart disease
  In: Prenatal Diagnosis 41 (2021), p. 733-742
  ISSN: 0197-3851
  DOI: 10.1002/pd.5892
  BibTeX: Download
• Dou Q., So TY., Jiang M., Liu Q., Vardhanabhuti V., Kaissis G., Li Z., Si W., Lee HHC., Yu K., Feng Z., Dong L., Burian E., Jungmann F., Braren R., Makowski M., Kainz B., Rueckert D., Glocker B., Yu SCH., Heng PA.:
  Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study
  In: npj Digital Medicine 4 (2021), Article No.: 60
  ISSN: 2398-6352
  DOI: 10.1038/s41746-021-00431-6
  BibTeX: Download
• Hou B., Kaissis G., Summers R., Kainz B.:
  RATCHET: Medical Transformer for Chest X-ray Diagnosis and Reporting
  Springer Science and Business Media Deutschland GmbH, 2021
  ISBN: 9783030872335
  DOI: 10.1007/978-3-030-87234-2_28
  BibTeX: Download
• Jiang G., Kainz B.:
  Deep radiance caching: Convolutional autoencoders deeper in ray tracing
  In: Computers & Graphics 94 (2021), p. 22-31
  ISSN: 0097-8493
  DOI: 10.1016/j.cag.2020.09.007
  BibTeX: Download
• Chartsias A., Gao S., Mumith A., Oliveira J., Bhatia K., Kainz B., Beqiri A.:
  Contrastive Learning for View Classification of Echocardiograms
  Springer Science and Business Media Deutschland GmbH, 2021
  ISBN: 9783030875824
  DOI: 10.1007/978-3-030-87583-1_15
  BibTeX: Download
• Ma Q., Robinson E.C., Kainz B., Rueckert D., Alansary A.:
  PialNN: A Fast Deep Learning Framework for Cortical Pial Surface Reconstruction
  Springer Science and Business Media Deutschland GmbH, 2021
  ISBN: 9783030875855
  DOI: 10.1007/978-3-030-87586-2_8
  BibTeX: Download
• Kainz B., Heinrich MP., Makropoulos A., Oppenheimer J., Mandegaran R., Sankar S., Deane C., Mischkewitz S., Al-Noor F., Rawdin AC., Ruttloff A., Klein-Weigel PF., Stevenson MD., Curry N.:
  Non-invasive diagnosis of deep vein thrombosis from ultrasound imaging with machine learning
  In: npj Digital Medicine 4 (2021), p. 1-20
  ISSN: 2398-6352
  DOI: 10.1038/s41746-021-00503-7
  URL: https://www.nature.com/articles/s41746-021-00503-7.pdf
  BibTeX: Download
• Meng Q., Matthew J., Zimmer VA., Gomez A., Lloyd DFA., Rueckert D., Kainz B.:
  Mutual Information-Based Disentangled Neural Networks for Classifying Unseen Categories in Different Domains: Application to Fetal Ultrasound Imaging
  In: IEEE Transactions on Medical Imaging 40 (2021), p. 722-734
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2020.3035424
  BibTeX: Download
• Reynaud H., Vlontzos A., Hou B., Beqiri A., Leeson P., Kainz B.:
  Ultrasound Video Transformers for Cardiac Ejection Fraction Estimation
  Springer Science and Business Media Deutschland GmbH, 2021
  ISBN: 9783030872304
  DOI: 10.1007/978-3-030-87231-1_48
  BibTeX: Download
• Schmidtke L., Vlontzos A., Ellershaw S., Lukens A., Arichi T., Kainz B.:
  Unsupervised Human Pose Estimation through Transforming Shape Templates
  2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2021 (Virtual, Online, USA, 19/06/2021 - 25/06/2021)
  In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition 2021
  DOI: 10.1109/CVPR46437.2021.00251
  BibTeX: Download
• Skelton E., Matthew J., Li Y., Khanal B., Martinez JJC., Toussaint N., Gupta C., Knight C., Kainz B., Hajnal JV., Rutherford M.:
  Towards automated extraction of 2D standard fetal head planes from 3D ultrasound acquisitions: A clinical evaluation and quality assessment comparison
  In: Radiography 27 (2021), p. 519-526
  ISSN: 1078-8174
  DOI: 10.1016/j.radi.2020.11.006
  BibTeX: Download
• Tan J., Hou B., Day TG., Simpson JM., Rueckert D., Kainz B.:
  Detecting Outliers with Poisson Image Interpolation
  Springer Science and Business Media Deutschland GmbH, 2021
  ISBN: 9783030872397
  DOI: 10.1007/978-3-030-87240-3_56
  BibTeX: Download

2020

• Budd S., Patkee P., Baburamani A., Rutherford M., Robinson EC., Kainz B.:
  Surface Agnostic Metrics for Cortical Volume Segmentation and Regression
  3rd International Workshop on Machine Learning in Clinical Neuroimaging, MLCN 2020, and 2nd International Workshop on Radiogenomics in Neuro-oncology, RNO-AI 2020, held in conjunction with MICCAI 2020 (Lima, PER, 04/10/2020 - 08/10/2020)
  In: Seyed Mostafa Kia, Hassan Mohy-ud-Din, Ahmed Abdulkadir, Cher Bass, Mohamad Habes, Jane Maryam Rondina, Chantal Tax, Hongzhi Wang, Thomas Wolfers, Saima Rathore, Madhura Ingalhalikar (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
  DOI: 10.1007/978-3-030-66843-3_1
  BibTeX: Download
• Grzech D., Kainz B., Glocker B., le Folgoc L.:
  Image Registration via Stochastic Gradient Markov Chain Monte Carlo
  2nd International Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2020, and the 3rd International Workshop on Graphs in Biomedical Image Analysis, GRAIL 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 08/10/2020 - 08/10/2020)
  In: Carole H. Sudre, Hamid Fehri, Tal Arbel, Christian F. Baumgartner, Adrian Dalca, Ryutaro Tanno, Koen Van Leemput, William M. Wells, Aristeidis Sotiras, Bartlomiej Papiez, Enzo Ferrante, Sarah Parisot (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
  DOI: 10.1007/978-3-030-60365-6_1
  BibTeX: Download
• Hinterreiter A., Streit M., Kainz B.:
  Projective Latent Interventions for Understanding and Fine-Tuning Classifiers
  3rd International Workshop on Interpretability of Machine Intelligence in Medical Image Computing, iMIMIC 2020, the 2nd International Workshop on Medical Image Learning with Less Labels and Imperfect Data, MIL3ID 2020, and the 5th International Workshop on Large-scale Annotation of Biomedical data and Expert Label Synthesis, LABELS 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2020 (Lima, PER, 04/10/2020 - 08/10/2020)
  In: Jaime Cardoso, Wilson Silva, Ricardo Cruz, Hien Van Nguyen, Badri Roysam, Nicholas Heller, Pedro Henriques Abreu, Jose Pereira Amorim, Ivana Isgum, Vishal Patel, Kevin Zhou, Steve Jiang, Ngan Le, Khoa Luu, Raphael Sznitman, Veronika Cheplygina, Samaneh Abbasi, Diana Mateus, Emanuele Trucco (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
  DOI: 10.1007/978-3-030-61166-8_2
  BibTeX: Download
• Liu T., Meng Q., Vlontzos A., Tan J., Rueckert D., Kainz B.:
  Ultrasound Video Summarization Using Deep Reinforcement Learning
  23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 04/10/2020 - 08/10/2020)
  In: Anne L. Martel, Purang Abolmaesumi, Danail Stoyanov, Diana Mateus, Maria A. Zuluaga, S. Kevin Zhou, Daniel Racoceanu, Leo Joskowicz (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
  DOI: 10.1007/978-3-030-59716-0_46
  BibTeX: Download
• Meng Q., Rueckert D., Kainz B.:
  Unsupervised Cross-domain Image Classification by Distance Metric Guided Feature Alignment
  1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 04/10/2020 - 08/10/2020)
  In: Yipeng Hu, Roxane Licandro, J. Alison Noble, Jana Hutter, Andrew Melbourne, Stephen Aylward, Esra Abaci Turk, Jordina Torrents Barrena, Jordina Torrents Barrena (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
  DOI: 10.1007/978-3-030-60334-2_15
  BibTeX: Download
• Miolane N., Guigui N., Le Brigant A., Mathe J., Hou B., Thanwerdas Y., Heyder S., Peltre O., Koep N., Zaatiti H., Hajri H., Cabanes Y., Gerald T., Chauchat P., Shewmake C., Brooks D., Kainz B., Donnat C., Holmes S., Pennec X.:
  Geomstats: A python package for riemannian geometry in machine learning
  In: Journal of Machine Learning Research 21 (2020)
  ISSN: 1532-4435
  BibTeX: Download
• Tan J., Au A., Meng Q., FinesilverSmith S., Simpson J., Rueckert D., Razavi R., Day T., Lloyd D., Kainz B.:
  Automated Detection of Congenital Heart Disease in Fetal Ultrasound Screening
  1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 04/10/2020 - 08/10/2020)
  In: Yipeng Hu, Roxane Licandro, J. Alison Noble, Jana Hutter, Andrew Melbourne, Stephen Aylward, Esra Abaci Turk, Jordina Torrents Barrena, Jordina Torrents Barrena (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
  DOI: 10.1007/978-3-030-60334-2_24
  BibTeX: Download
• Tan J., Kainz B.:
  Divergent search for image classification behaviors
  2020 Genetic and Evolutionary Computation Conference, GECCO 2020 (Cancun, MEX, 08/07/2020 - 12/07/2020)
  In: GECCO 2020 Companion - Proceedings of the 2020 Genetic and Evolutionary Computation Conference Companion 2020
  DOI: 10.1145/3377929.3389973
  BibTeX: Download
• Vlontzos A., Budd S., Hou B., Rueckert D., Kainz B.:
  3D Probabilistic Segmentation and Volumetry from 2D Projection Images
  2nd International Workshop on Thoracic Image Analysis, TIA 2020 Held in Conjunction with Medical Image Computing and Computer-Assisted Intervention Conference, MICCAI 2020 (Lima, PER, 08/10/2020 - 08/10/2020)
  In: Jens Petersen, Raúl San José Estépar, Alexander Schmidt-Richberg, Sarah Gerard, Bianca Lassen-Schmidt, Colin Jacobs, Reinhard Beichel, Kensaku Mori (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
  DOI: 10.1007/978-3-030-62469-9_5
  BibTeX: Download

2019

• Alansary A., Oktay O., Li Y., Le Folgoc L., Hou B., Vaillant G., Kamnitsas K., Vlontzos A., Glocker B., Kainz B., Rueckert D.:
  Evaluating reinforcement learning agents for anatomical landmark detection
  In: Medical Image Analysis 53 (2019), p. 156-164
  ISSN: 1361-8415
  DOI: 10.1016/j.media.2019.02.007
  BibTeX: Download
• Budd S., Sinclair M., Khanal B., Matthew J., Lloyd D., Gomez A., Toussaint N., Robinson EC., Kainz B.:
  Confident head circumference measurement from ultrasound with real-time feedback for sonographers
  22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13/10/2019 - 17/10/2019)
  In: Dinggang Shen, Pew-Thian Yap, Tianming Liu, Terry M. Peters, Ali Khan, Lawrence H. Staib, Caroline Essert, Sean Zhou (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
  DOI: 10.1007/978-3-030-32251-9_75
  BibTeX: Download
• Castro DC., Tan J., Kainz B., Konukoglu E., Glocker B.:
  Morpho-Mnist: Quantitative assessment and diagnostics for representation learning
  In: Journal of Machine Learning Research 20 (2019)
  ISSN: 1532-4435
  BibTeX: Download
• Chotzoglou E., Kainz B.:
  Exploring the relationship between segmentation uncertainty, segmentation performance and inter-observer variability with probabilistic networks
  4th International Workshop on Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, LABELS 2019, the 1st International Workshop on Hardware Aware Learning for Medical Imaging and Computer Assisted Intervention, HAL-MICCAI 2019, and the 2nd International Workshop on Correction of Brainshift with Intra-Operative Ultrasound, CuRIOUS 2019, held in conjunction with the 22nd International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 17/10/2019 - 17/10/2019)
  In: Luping Zhou, Nicholas Heller, Yiyu Shi, Danny Chen, X. Sharon Hu, Yiming Xiao, Raphael Sznitman, Veronika Cheplygina, Diana Mateus, Emanuele Trucco, Matthieu Chabanas, Hassan Rivaz, Ingerid Reinertsen (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
  DOI: 10.1007/978-3-030-33642-4_6
  BibTeX: Download
• Holland R., Patel U., Lung P., Chotzoglou E., Kainz B.:
  Automatic detection of bowel disease with residual networks
  2nd International Workshop on Predictive Intelligence in Medicine, PRIME 2019, held in conjunction with the 22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13/10/2019 - 13/10/2019)
  In: Islem Rekik, Ehsan Adeli, Sang Hyun Park (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
  DOI: 10.1007/978-3-030-32281-6_16
  BibTeX: Download
• Hou B., Vlontzos A., Alansary A., Rueckert D., Kainz B.:
  Flexible Conditional Image Generation of Missing Data with Learned Mental Maps
  2nd International Workshop on Machine Learning for Medical Image Reconstruction, MLMIR 2019 held in Conjunction with 22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 17/10/2019 - 17/10/2019)
  In: Florian Knoll, Andreas Maier, Daniel Rueckert, Jong Chul Ye (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
  DOI: 10.1007/978-3-030-33843-5_13
  BibTeX: Download
• Lloyd DF., Pushparajah K., Simpson JM., van Amerom JF., van Poppel MP., Schulz A., Kainz B., Deprez M., Lohezic M., Allsop J., Mathur S., Bellsham-Revell H., Vigneswaran T., Charakida M., Miller O., Zidere V., Sharland G., Rutherford M., Hajnal JV., Razavi R.:
  Three-dimensional visualisation of the fetal heart using prenatal MRI with motion-corrected slice-volume registration: a prospective, single-centre cohort study
  In: Lancet 393 (2019), p. 1619-1627
  ISSN: 0140-6736
  DOI: 10.1016/S0140-6736(18)32490-5
  BibTeX: Download
• Meng Q., Pawlowski N., Rueckert D., Kainz B.:
  Representation disentanglement for multi-task learning with application to fetal ultrasound
  1st International Workshop on Smart Ultrasound Imaging, SUSI 2019, and the 4th International Workshop on Preterm, Perinatal and Paediatric Image Analysis, PIPPI 2019, held in conjunction with the 22nd International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 17/10/2019 - 17/10/2019)
  In: Qian Wang, Alberto Gomez, Jana Hutter, Alberto Gomez, Veronika Zimmer, Jana Hutter, Emma Robinson, Daan Christiaens, Andrew Melbourne, Kristin McLeod, Oliver Zettinig, Roxane Licandro, Esra Abaci Turk (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
  DOI: 10.1007/978-3-030-32875-7_6
  BibTeX: Download
• Meng Q., Sinclair M., Zimmer V., Hou B., Rajchl M., Toussaint N., Oktay O., Schlemper J., Gomez A., Housden J., Matthew J., Rueckert D., Schnabel JA., Kainz B.:
  Weakly Supervised Estimation of Shadow Confidence Maps in Fetal Ultrasound Imaging
  In: IEEE Transactions on Medical Imaging 38 (2019), p. 2755-2767
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2019.2913311
  BibTeX: Download
• Robinson R., Valindria VV., Bai W., Oktay O., Kainz B., Suzuki H., Sanghvi MM., Aung N., Paiva JM., Zemrak F., Fung K., Lukaschuk E., Lee AM., Carapella V., Kim YJ., Piechnik SK., Neubauer S., Petersen SE., Page C., Matthews PM., Rueckert D., Glocker B.:
  Automated quality control in image segmentation: Application to the UK Biobank cardiovascular magnetic resonance imaging study
  In: Journal of Cardiovascular Magnetic Resonance 21 (2019), Article No.: 18
  ISSN: 1097-6647
  DOI: 10.1186/s12968-019-0523-x
  BibTeX: Download
• Schlemper J., Oktay O., Schaap M., Heinrich M., Kainz B., Glocker B., Rueckert D.:
  Attention gated networks: Learning to leverage salient regions in medical images
  In: Medical Image Analysis 53 (2019), p. 197-207
  ISSN: 1361-8415
  DOI: 10.1016/j.media.2019.01.012
  BibTeX: Download
• Schultz T., Puig A., Kainz B.:
  Foreword to the special section on the Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM) at Medical Image Computing and Computer Assisted Intervention (MICCAI) 2018
  In: Computers & Graphics 83 (2019), p. A5-A6
  ISSN: 0097-8493
  DOI: 10.1016/j.cag.2019.08.001
  BibTeX: Download
• Tan J., Au A., Meng Q., Kainz B.:
  Semi-supervised learning of fetal anatomy from ultrasound
  1st MICCAI Workshop on Domain Adaptation and Representation Transfer, DART 2019, and the 1st International Workshop on Medical Image Learning with Less Labels and Imperfect Data, MIL3ID 2019, held in conjunction with 22nd International Conference on Medical Image Computing and Computer- Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13/10/2019 - 17/10/2019)
  In: Qian Wang, Fausto Milletari, Nicola Rieke, Hien V. Nguyen, Badri Roysam, Shadi Albarqouni, M. Jorge Cardoso, Ziyue Xu, Konstantinos Kamnitsas, Vishal Patel, Steve Jiang, Kevin Zhou, Khoa Luu, Ngan Le (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
  DOI: 10.1007/978-3-030-33391-1_18
  BibTeX: Download
• Vlontzos A., Alansary A., Kamnitsas K., Rueckert D., Kainz B.:
  Multiple landmark detection using multi-agent reinforcement learning
  22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13/10/2019 - 17/10/2019)
  In: Dinggang Shen, Pew-Thian Yap, Tianming Liu, Terry M. Peters, Ali Khan, Lawrence H. Staib, Caroline Essert, Sean Zhou (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
  DOI: 10.1007/978-3-030-32251-9_29
  BibTeX: Download
• Wright R., Toussaint N., Gomez A., Zimmer V., Khanal B., Matthew J., Skelton E., Kainz B., Rueckert D., Hajnal JV., Schnabel JA.:
  Complete Fetal Head Compounding from Multi-view 3D Ultrasound
  22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13/10/2019 - 17/10/2019)
  In: Dinggang Shen, Pew-Thian Yap, Tianming Liu, Terry M. Peters, Ali Khan, Lawrence H. Staib, Caroline Essert, Sean Zhou (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
  DOI: 10.1007/978-3-030-32248-9_43
  BibTeX: Download

2018

• Alansary A., Le Folgoc L., Vaillant G., Oktay O., Li Y., Bai W., Passerat-Palmbach J., Guerrero R., Kamnitsas K., Hou B., Mcdonagh S., Glocker B., Kainz B., Rueckert D.:
  Automatic view planning with multi-scale deep reinforcement learning agents
  21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16/09/2018 - 20/09/2018)
  In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-030-00928-1_32
  BibTeX: Download
• Bai W., Sinclair M., Tarroni G., Oktay O., Rajchl M., Vaillant G., Lee AM., Aung N., Lukaschuk E., Sanghvi MM., Zemrak F., Fung K., Paiva JM., Carapella V., Kim YJ., Suzuki H., Kainz B., Matthews PM., Petersen SE., Piechnik SK., Neubauer S., Glocker B., Rueckert D.:
  Automated cardiovascular magnetic resonance image analysis with fully convolutional networks 08 Information and Computing Sciences 0801 Artificial Intelligence and Image Processing
  In: Journal of Cardiovascular Magnetic Resonance 20 (2018), Article No.: 65
  ISSN: 1097-6647
  DOI: 10.1186/s12968-018-0471-x
  BibTeX: Download
• Cerrolaza JJ., Li Y., Biffi C., Gomez A., Sinclair M., Matthew J., Knight C., Kainz B., Rueckert D.:
  3D fetal skull reconstruction from 2DUS via deep conditional generative networks
  21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16/09/2018 - 20/09/2018)
  In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-030-00928-1_44
  BibTeX: Download
• Hou B., Khanal B., Alansary A., Mcdonagh S., Davidson A., Rutherford M., Hajnal J., Rueckert D., Glocker B., Kainz B.:
  3-D Reconstruction in Canonical Co-Ordinate Space from Arbitrarily Oriented 2-D Images
  In: IEEE Transactions on Medical Imaging 37 (2018), p. 1737-1750
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2018.2798801
  BibTeX: Download
• Hou B., Miolane N., Khanal B., Lee MCH., Alansary A., Mcdonagh S., Hajnal JV., Rueckert D., Glocker B., Kainz B.:
  Computing CNN loss and gradients for pose estimation with Riemannian geometry
  21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16/09/2018 - 20/09/2018)
  In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-030-00928-1_85
  BibTeX: Download
• Kainz B., Bhatia K., Vercauteren T., Oktay O.:
  RAMBO 2018 Preface
  In: David Snead, Emanuele Trucco, Danail Stoyanov, Zeike Taylor, Lena Maier-Hein, Nasir Rajpoot, Hrvoje Bogunovic, Francesco Ciompi, Mitko Veta, Mona K. Garvin, Xin Jan Chen, Anne Martel, Jeroen van der Laak, Yanwu Xu, Stephen McKenna (ed.): Image Analysis for Moving Organ, Breast, and Thoracic Images - Third International Workshop, RAMBO 2018, Fourth International Workshop, BIA 2018, and First International Workshop, TIA 2018, Held in Conjunction with MICCAI 2018, Proceedings, Springer Verlag, 2018, p. VII- (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol.11040 LNCS)
  BibTeX: Download
• Lloyd DFA, van Poppel M, Schultz A, Pushparajah K, Simpson J, van Amerom JFP, Kainz B, Kuklisova-Murgasova M, Vigneswaran T, Charakida M, Miller O, Zidere V, Sharland G, Rutherford M, Hajnal J, Razavi R:
  MOTION CORRECTED FETAL CARDIAC MRI INCREASES DIAGNOSTIC CONFIDENCE IN CLINICALLY CHALLENGING CASES
  In: Heart 104 (2018), p. A11-A11
  ISSN: 1355-6037
  DOI: 10.1136/heartjnl-2017-BCCA.31
  BibTeX: Download
• Kamnitsas K., Bai W., Ferrante E., Mcdonagh S., Sinclair M., Pawlowski N., Rajchl M., Lee M., Kainz B., Rueckert D., Glocker B.:
  Ensembles of multiple models and architectures for robust brain tumour segmentation
  3rd International Workshop on Brainlesion, BrainLes 2017 Held in Conjunction with Medical Image Computing for Computer Assisted Intervention , MICCAI 2017 (Quebec City, QC, CAN, 14/09/2017 - 14/09/2017)
  In: Bjoern Menze, Alessandro Crimi, Hugo Kuijf, Mauricio Reyes, Spyridon Bakas (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-319-75238-9_38
  BibTeX: Download
• Khanal B., Gomez A., Toussaint N., Mcdonagh S., Zimmer V., Skelton E., Matthew J., Grzech D., Wright R., Gupta C., Hou B., Rueckert D., Schnabel JA., Kainz B.:
  EchoFusion: Tracking and reconstruction of objects in 4D freehand ultrasound imaging without external trackers
  1st International Workshop on Data Driven Treatment Response Assessment, DATRA 2018 and 3rd International Workshop on Preterm, Perinatal, and Paediatric Image Analysis, PIPPI 2018 Held in Conjunction with 21st International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2018 (Granada, ESP, 16/09/2018 - 16/09/2018)
  In: Andrew Melbourne, Rosalind Aughwane, Emma Robinson, Roxane Licandro, Melanie Gau, Martin Kampel, Matthew DiFranco, Paolo Rota, Roxane Licandro, Pim Moeskops, Ernst Schwartz, Antonios Makropoulos (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-030-00807-9_12
  BibTeX: Download
• Li Y., Alansary A., Cerrolaza JJ., Khanal B., Sinclair M., Matthew J., Gupta C., Knight C., Kainz B., Rueckert D.:
  Fast multiple landmark localisation using a patch-based iterative network
  21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16/09/2018 - 20/09/2018)
  In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-030-00928-1_64
  BibTeX: Download
• Li Y., Khanal B., Hou B., Alansary A., Cerrolaza JJ., Sinclair M., Matthew J., Gupta C., Knight C., Kainz B., Rueckert D.:
  Standard plane detection in 3D fetal ultrasound using an iterative transformation network
  21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16/09/2018 - 20/09/2018)
  In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-030-00928-1_45
  BibTeX: Download
• Meng Q., Baumgartner C., Sinclair M., Housden J., Rajchl M., Gomez A., Hou B., Toussaint N., Zimmer V., Tan J., Matthew J., Rueckert D., Schnabel J., Kainz B.:
  Automatic shadow detection in 2D ultrasound images
  1st International Workshop on Data Driven Treatment Response Assessment, DATRA 2018 and 3rd International Workshop on Preterm, Perinatal, and Paediatric Image Analysis, PIPPI 2018 Held in Conjunction with 21st International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2018 (Granada, ESP, 16/09/2018 - 16/09/2018)
  In: Andrew Melbourne, Rosalind Aughwane, Emma Robinson, Roxane Licandro, Melanie Gau, Martin Kampel, Matthew DiFranco, Paolo Rota, Roxane Licandro, Pim Moeskops, Ernst Schwartz, Antonios Makropoulos (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-030-00807-9_7
  BibTeX: Download
• Oktay O., Ferrante E., Kamnitsas K., Heinrich M., Bai W., Caballero J., Cook SA., De Marvao A., Dawes T., O'Regan DP., Kainz B., Glocker B., Rueckert D.:
  Anatomically Constrained Neural Networks (ACNNs): Application to Cardiac Image Enhancement and Segmentation
  In: IEEE Transactions on Medical Imaging 37 (2018), p. 384-395
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2017.2743464
  BibTeX: Download
• Robinson R., Oktay O., Bai W., Valindria VV., Sanghvi MM., Aung N., Paiva JM., Zemrak F., Fung K., Lukaschuk E., Lee AM., Carapella V., Kim YJ., Kainz B., Piechnik SK., Neubauer S., Petersen SE., Page C., Rueckert D., Glocker B.:
  Real-Time Prediction of Segmentation Quality
  21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16/09/2018 - 20/09/2018)
  In: Alejandro F. Frangi, Gabor Fichtinger, Julia A. Schnabel, Carlos Alberola-López, Christos Davatzikos (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-030-00937-3_66
  BibTeX: Download
• Sinclair M., Baumgartner CF., Matthew J., Bai W., Martinez JC., Li Y., Smith S., Knight CL., Kainz B., Hajnal J., King AP., Rueckert D.:
  Human-level Performance on Automatic Head Biometrics in Fetal Ultrasound Using Fully Convolutional Neural Networks
  40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018 (Honolulu, HI, USA, 18/07/2018 - 21/07/2018)
  In: Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2018
  DOI: 10.1109/EMBC.2018.8512278
  BibTeX: Download
• Tanno R., Makropoulos A., Arslan S., Oktay O., Mischkewitz S., Al-Noor F., Oppenheimer J., Mandegaran R., Kainz B., Heinrich MP.:
  AutoDVT: Joint real-time classification for vein compressibility analysis in deep vein thrombosis ultrasound diagnostics
  21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16/09/2018 - 20/09/2018)
  In: Gabor Fichtinger, Christos Davatzikos, Carlos Alberola-López, Alejandro F. Frangi, Julia A. Schnabel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
  DOI: 10.1007/978-3-030-00934-2_100
  BibTeX: Download
• Verbruggen SW., Kainz B., Shelmerdine SC., Arthurs OJ., Hajnal JV., Rutherford MA., Phillips ATM., Nowlan NC.:
  Altered biomechanical stimulation of the developing hip joint in presence of hip dysplasia risk factors
  In: Journal of Biomechanics 78 (2018), p. 1-9
  ISSN: 0021-9290
  DOI: 10.1016/j.jbiomech.2018.07.016
  BibTeX: Download
• Verbruggen SW., Kainz B., Shelmerdine SC., Hajnal JV., Rutherford MA., Arthurs OJ., Phillips ATM., Nowlan NC.:
  Stresses and strains on the human fetal skeleton during development
  In: Journal of the Royal Society Interface 15 (2018), Article No.: 20170593
  ISSN: 1742-5689
  DOI: 10.1098/rsif.2017.0593
  BibTeX: Download

2017

• Alansary A., Rajchl M., Mcdonagh SG., Murgasova M., Damodaram M., Lloyd DFA., Davidson A., Rutherford M., Hajnal JV., Rueckert D., Kainz B.:
  PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI
  In: IEEE Transactions on Medical Imaging 36 (2017), p. 2031-2044
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2017.2737081
  BibTeX: Download
• Baumgartner CF., Kamnitsas K., Matthew J., Fletcher TP., Smith S., Koch LM., Kainz B., Rueckert D.:
  SonoNet: Real-Time Detection and Localisation of Fetal Standard Scan Planes in Freehand Ultrasound
  In: IEEE Transactions on Medical Imaging 36 (2017), p. 2204-2215
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2017.2712367
  BibTeX: Download
• Cerrolaza JJ., Oktay O., Gomez A., Matthew J., Knight C., Kainz B., Rueckert D.:
  Fetal skull segmentation in 3D ultrasound via structured geodesic random forest
  International Workshop on Fetal and Infant Image Analysis, FIFI 2017 and 4th International Workshop on Ophthalmic Medical Image Analysis, OMIA 2017 held in Conjunction with 20th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2017 (Quebec City, QC, CAN, 14/09/2017 - 14/09/2017)
  In: M. Jorge Cardoso, Tal Arbel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2017
  DOI: 10.1007/978-3-319-67561-9_3
  BibTeX: Download
• Hou B., Alansary A., McDonagh S., Davidson A., Rutherford M., Hajnal JV., Rueckert D., Glocker B., Kainz B.:
  Predicting slice-to-volume transformation in presence of arbitrary subject motion
  20th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2017 (Quebec City, QC, CAN, 11/09/2017 - 13/09/2017)
  In: Pierre Jannin, Simon Duchesne, Maxime Descoteaux, Alfred Franz, D. Louis Collins, Lena Maier-Hein (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2017
  DOI: 10.1007/978-3-319-66185-8_34
  BibTeX: Download
• Kainz B., Bhatia K., Vercauteren T.:
  Preface RAMBO 2017
  Springer Verlag, 2017
  ISBN: 9783319675633
  URL: https://www.scopus.com/record/display.uri?eid=2-s2.0-85029585297&origin=inward
  BibTeX: Download
• Mcdonagh S., Hou B., Alansary A., Oktay O., Kamnitsas K., Rutherford M., Hajnal JV., Kainz B.:
  Context-sensitive super-resolution for fast fetal magnetic resonance imaging
  5th International Workshop on Computational Methods for Molecular Imaging, CMMI 2017, 2nd International Workshop on Reconstruction and Analysis of Moving Body Organs, RAMBO 2017 and 1st International Stroke Workshop on Imaging and Treatment Challenges, SWITCH 2017 held in Conjunction with 20th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2017 (Quebec City, QC, CAN, 14/09/2017 - 14/09/2017)
  In: M. Jorge Cardoso, Tal Arbel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2017
  DOI: 10.1007/978-3-319-67564-0_12
  BibTeX: Download
• Miao H., Mistelbauer G., Karimov A., Alansary A., Davidson A., Lloyd DFA., Damodaram M., Story L., Hutter J., Hajnal JV., Rutherford M., Preim B., Kainz B., Groeller ME.:
  Placenta maps: In utero placental health assessment of the human fetus
  In: IEEE Transactions on Visualization and Computer Graphics 23 (2017), p. 1612-1623
  ISSN: 1077-2626
  DOI: 10.1109/TVCG.2017.2674938
  BibTeX: Download
• Rajchl M., Lee MCH., Oktay O., Kamnitsas K., Passerat-Palmbach J., Bai W., Damodaram M., Rutherford MA., Hajnal JV., Kainz B., Rueckert D.:
  DeepCut: Object Segmentation from Bounding Box Annotations Using Convolutional Neural Networks
  In: IEEE Transactions on Medical Imaging 36 (2017), p. 674-683
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2016.2621185
  BibTeX: Download
• Toisoul A., Rueckert D., Kainz B.:
  Accessible GLSL shader programming
  38th Annual Conference on European Association for Computer Graphics, EUROGRAPHICS 2017 (Lyon, FRA, 24/04/2017 - 28/04/2017)
  In: European Association for Computer Graphics - 38th Annual Conference, EUROGRAPHICS 2017 - Education Papers 2017
  DOI: 10.2312/eged.20171024
  BibTeX: Download

2016

• Alansary A., Kamnitsas K., Davidson A., Khlebnikov R., Rajchl M., Malamateniou C., Rutherford M., Hajnal JV., Glocker B., Rueckert D., Kainz B.:
  Fast fully automatic segmentation of the human placenta from motion corrupted MRI
  In: Gozde Unal, Sebastian Ourselin, Leo Joskowicz, Mert R. Sabuncu, William Wells (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2016
  DOI: 10.1007/978-3-319-46723-8_68
  BibTeX: Download
• Baumgartner CF., Kamnitsas K., Matthew J., Smith S., Kainz B., Rueckert D.:
  Real-time standard scan plane detection and localisation in fetal ultrasound using fully convolutional neural networks
  In: Gozde Unal, Sebastian Ourselin, Leo Joskowicz, Mert R. Sabuncu, William Wells (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2016
  DOI: 10.1007/978-3-319-46723-8_24
  BibTeX: Download
• Rueckert D., Glocker B., Kainz B.:
  Learning clinically useful information from images: Past, present and future
  In: Medical Image Analysis 33 (2016), p. 1339-1351
  ISSN: 1361-8415
  DOI: 10.1016/j.media.2016.06.009
  BibTeX: Download

2015

• Alansary A., Lee M., Keraudren K., Kainz B., Malamateniou C., Rutherford M., Hajnal JV., Glocker B., Rueckert D.:
  Automatic brain localization in fetal MRI using superpixel graphs
  1st International Workshop on Machine Learning Meets Medical Imaging, MLMMI 2015 (Lille, FRA, 11/07/2015 - 11/07/2015)
  In: Kanwal K. Bhatia, Herve Lombaert (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2015
  DOI: 10.1007/978-3-319-27929-9_2
  BibTeX: Download
• Bowles C., Nowlan NC., Hayat TTA., Malamateniou C., Rutherford M., Hajnal JV., Rueckert D., Kainz B.:
  Machine learning for the automatic localisation of foetal body parts in cine-MRI scans
  Medical Imaging 2015: Image Processing (Orlando, FL, USA, 24/02/2015 - 26/02/2015)
  In: Martin A. Styner, Sebastien Ourselin (ed.): Progress in Biomedical Optics and Imaging - Proceedings of SPIE 2015
  DOI: 10.1117/12.2081669
  BibTeX: Download
• Egger J., Busse H., Brandmaier P., Seider D., Gawlitza M., Strocka S., Voglreiter P., Dokter M., Hofmann M., Kainz B., Chen X., Hann A., Boechat P., Yu W., Freisleben B., Alhonnoro T., Pollari M., Moche M., Schmalstieg D.:
  RFA-cut: Semi-automatic segmentation of radiofrequency ablation zones with and without needles via optimal s-t-cuts
  37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2015 (Milan, ITA, 25/08/2015 - 29/08/2015)
  In: Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2015
  DOI: 10.1109/EMBC.2015.7318883
  BibTeX: Download
• Egger J., Busse H., Brandmaier P., Seider D., Gawlitza M., Strocka S., Voglreiter P., Dokter M., Hofmann M., Kainz B., Hann A., Chen X., Alhonnoro T., Pollari M., Schmalstieg D., Moche M.:
  Interactive Volumetry of Liver Ablation Zones
  In: Scientific Reports 5 (2015), Article No.: 15373
  ISSN: 2045-2322
  DOI: 10.1038/srep15373
  BibTeX: Download
• Kainz B., Alansary A., Malamateniou C., Keraudren K., Rutherford M., Hajnal JV., Rueckert D.:
  Flexible reconstruction and correction of unpredictable motion from stacks of 2D images
  18th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2015 (Munich, DEU, 05/10/2015 - 09/10/2015)
  In: Joachim Hornegger, Alejandro F. Frangi, William M. Wells, Alejandro F. Frangi, Nassir Navab, Joachim Hornegger, Nassir Navab, William M. Wells, William M. Wells, Alejandro F. Frangi, Joachim Hornegger, Nassir Navab (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2015
  DOI: 10.1007/978-3-319-24571-3_66
  BibTeX: Download
• Kainz B., Malamateniou C., Ferrazzi G., Murgasova M., Egger J., Keraudren K., Rutherford M., Hajnal JV., Rueckert D.:
  Adaptive scan strategies for fetal MRI imaging using slice to volume techniques
  12th IEEE International Symposium on Biomedical Imaging, ISBI 2015 (Brooklyn, NY, USA, 16/04/2015 - 19/04/2015)
  In: Proceedings - International Symposium on Biomedical Imaging 2015
  DOI: 10.1109/ISBI.2015.7164004
  BibTeX: Download
• Kainz B., Steinberger M., Wein W., Kuklisova-Murgasova M., Malamateniou C., Keraudren K., Torsney-Weir T., Rutherford M., Aljabar P., Hajnal JV., Rueckert D.:
  Fast Volume Reconstruction from Motion Corrupted Stacks of 2D Slices
  In: IEEE Transactions on Medical Imaging 34 (2015), p. 1901-1913
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2015.2415453
  BibTeX: Download
• Keraudren K., Kainz B., Oktay O., Kyriakopoulou V., Rutherford M., Hajnal JV., Rueckert D.:
  Automated localization of fetal organs in MRI using random forests with steerable features
  18th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2015 (Munich, DEU, 05/10/2015 - 09/10/2015)
  In: Alejandro F. Frangi, Nassir Navab, Joachim Hornegger, William M. Wells (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2015
  DOI: 10.1007/978-3-319-24574-4_74
  BibTeX: Download

2014

• Kainz B., Keraudren K., Kyriakopoulou V., Rutherford M., Hajnal JV., Rueckert D.:
  Fast fully automatic brain detection in fetal MRI using dense rotation invariant image descriptors
  2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014 (Beijing, CHN, 29/04/2014 - 02/05/2014)
  In: 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014 2014
  DOI: 10.1109/isbi.2014.6868098
  BibTeX: Download
• Kainz B., Malamateniou C., Murgasova M., Keraudren K., Rutherford M., Hajnal JV., Rueckert D.:
  Motion corrected 3D reconstruction of the fetal thorax from prenatal MRI
  17th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2014 (USA, 14/09/2014 - 18/09/2014)
  In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2014
  DOI: 10.1007/978-3-319-10470-6_36
  BibTeX: Download
• Kainz B., Voglreiter P., Sereinigg M., Wiederstein-Grasser I., Mayrhauser U., Köstenbauer S., Pollari M., Khlebnikov R., Seise M., Alhonnoro T., Häme Y., Seider D., Flanagan R., Bost C., Mühl J., O'Neill D., Peng T., Payne S., Rueckert D., Schmalstieg D., Moche M., Kolesnik M., Stiegler P., Portugaller RH.:
  High-resolution contrast enhanced multi-phase hepatic computed tomography data fromaporcine Radio-Frequency Ablation study
  2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014 (Beijing, CHN, 29/04/2014 - 02/05/2014)
  In: 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014 2014
  DOI: 10.1109/isbi.2014.6867814
  BibTeX: Download
• Keraudren K., Kuklisova-Murgasova M., Kyriakopoulou V., Malamateniou C., Rutherford MA., Kainz B., Hajnal JV., Rueckert D.:
  Automated fetal brain segmentation from 2D MRI slices for motion correction
  In: NeuroImage 101 (2014), p. 633-643
  ISSN: 1053-8119
  DOI: 10.1016/j.neuroimage.2014.07.023
  BibTeX: Download
• Khlebnikov R., Voglreiter P., Steinberger M., Kainz B., Schmalstieg D.:
  Parallel irradiance caching for interactive monte-carlo direct volume rendering
  In: Computer Graphics Forum 33 (2014), p. 61-70
  ISSN: 0167-7055
  DOI: 10.1111/cgf.12362
  BibTeX: Download
• Steinberger M., Kenzel M., Kainz B., Mueller J., Wonka P., Schmalstieg D.:
  Parallel generation of architecture on the GPU
  In: Computer Graphics Forum 33 (2014), p. 73-82
  ISSN: 0167-7055
  DOI: 10.1111/cgf.12312
  BibTeX: Download
• Steinberger M., Kenzel M., Kainz B., Wonka P., Schmalstieg D.:
  On-the-fly generation and rendering of infinite cities on the GPU
  In: Computer Graphics Forum 33 (2014), p. 105-114
  ISSN: 0167-7055
  DOI: 10.1111/cgf.12315
  BibTeX: Download

2013

• Kerbl B., Voglreiter P., Khlebnikov R., Schmalstieg D., Seider D., Moche M., Stiegler P., Portugaller RH., Kainz B.:
  Intervention planning of hepatocellular carcinoma radio-frequency ablations
  International Workshop on Clinical Image-Based Procedures: From Planning to Intervention, CLIP 2012 - Held in Conjunction with MICCAI 2012 (FRA, 05/10/2012 - 05/10/2012)
  In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2013
  DOI: 10.1007/978-3-642-38079-2_2
  BibTeX: Download
• Khlebnikov R., Kainz B., Steinberger M., Schmalstieg D.:
  Noise-based volume rendering for the visualization of multivariate volumetric data
  In: IEEE Transactions on Visualization and Computer Graphics 19 (2013), p. 2926-2935
  ISSN: 1077-2626
  DOI: 10.1109/TVCG.2013.180
  BibTeX: Download

2012

• Kainz B., Hauswiesner S., Reitmayr G., Steinberger M., Grasset R., Gruber L., Veas E., Kalkofen D., Seichter H., Schmalstieg D.:
  Omni kinect: Real-time dense volumetric data acquisition and applications
  18th ACM Symposium on Virtual Reality Software and Technology, VRST 2012 (CAN, 10/12/2012 - 12/12/2012)
  In: Proceedings of the ACM Symposium on Virtual Reality Software and Technology, VRST 2012
  BibTeX: Download
• Kainz B., Portugaller RH., Seider D., Moche M., Stiegler P., Schmalstieg D.:
  Volume visualization in the clinical practice
  6th International Workshop on Augmented Environments for Computer-Assisted Interventions, AE-CAI 2011, Held in Conjunction with the Medical Image Computing and Computer-Assisted Interventions, MICCAI 2011 (CAN, 22/09/2011 - 22/09/2011)
  In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2012
  DOI: 10.1007/978-3-642-32630-1_8
  BibTeX: Download
• Khlebnikov R., Kainz B., Steinberger M., Streit M., Schmalstieg D.:
  Procedural texture synthesis for zoom-independent visualization of multivariate data
  In: Computer Graphics Forum 31 (2012), p. 1355-1364
  ISSN: 0167-7055
  DOI: 10.1111/j.1467-8659.2012.03127.x
  BibTeX: Download
• Steinberger M., Kainz B., Hauswiesner S., Khlebnikov R., Kalkofen D., Schmalstieg D.:
  Ray prioritization using stylization and visual saliency
  In: Computers & Graphics 36 (2012), p. 673-684
  ISSN: 0097-8493
  DOI: 10.1016/j.cag.2012.03.037
  BibTeX: Download
• Steinberger M., Kainz B., Kerbl B., Hauswiesner S., Kenzel M., Schmalstieg D.:
  Softshell: Dynamic scheduling on GPUs
  In: Acm Transactions on Graphics 31 (2012), Article No.: 161
  ISSN: 0730-0301
  DOI: 10.1145/2366145.2366180
  BibTeX: Download
• Steinberger M., Kenzel M., Kainz B., Schmalstieg D.:
  ScatterAlloc: Massively parallel dynamic memory allocation for the GPU
  2012 Innovative Parallel Computing, InPar 2012 (USA, 13/05/2012 - 14/05/2012)
  In: 2012 Innovative Parallel Computing, InPar 2012 2012
  DOI: 10.1109/InPar.2012.6339604
  BibTeX: Download
• Voglreiter P., Steinberger M., Schmalstieg D., Kainz B.:
  Volumetric real-time particle-based representation of large unstructured tetrahedral polygon meshes
  MICCAI 2012 International Workshop on Mesh Processing in Medical Image Analysis, MeshMed 2012 (FRA, 01/10/2012 - 01/10/2012)
  In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2012
  DOI: 10.1007/978-3-642-33463-4_16
  BibTeX: Download

2011

• Kainz B., Steinberger M., Hauswiesner S., Khlebnikov R., Kalkofen D., Schmalstieg D.:
  Using perceptual features to prioritize ray-based image generation
  2011 15th ACM SIGGRAPH Symposium on Interactive 3D Graphics and Games, I3D'11 (USA, 18/02/2011 - 20/02/2011)
  In: Proceedings of the Symposium on Interactive 3D Graphics 2011
  DOI: 10.1145/1944745.1944795
  BibTeX: Download
• Kainz B., Steinberger M., Hauswiesner S., Khlebnikov R., Schmalstieg D.:
  Stylization-based ray prioritization for guaranteed frame rates
  9th International Symposium on Non-Photorealistic Animation and Rendering, NPAR 2011, Co-located with ACM SIGGRAPH 2011 (CAN, 05/08/2011 - 07/08/2011)
  In: NPAR Symposium on Non-Photorealistic Animation and Rendering 2011
  DOI: 10.1145/2024676.2024685
  BibTeX: Download
• Khlebnikov R., Kainz B., Muehl J., Schmalstieg D.:
  Crepuscular rays for tumor accessibility planning
  In: IEEE Transactions on Visualization and Computer Graphics 17 (2011), p. 2163-2172
  ISSN: 1077-2626
  DOI: 10.1109/TVCG.2011.184
  BibTeX: Download

2010

• Alhonnoro T., Pollari M., Lilja M., Flanagan R., Kainz B., Muehl J., Mayrhauser U., Portugaller H., Stiegler P., Tscheliessnigg K.:
  Vessel segmentation for ablation treatment planning and simulation
  13th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2010 (CHN, 20/09/2010 - 24/09/2010)
  In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2010
  DOI: 10.1007/978-3-642-15705-9_6
  BibTeX: Download

2009

• Kainz B., Grabner M., Bornik A., Hauswiesner S., Muehl J., Schmalstieg D.:
  Ray Casting of Multiple Volumetric Datasets with Polyhedral Boundaries on Manycore GPUs
  In: Acm Transactions on Graphics 28 (2009), p. 1-9
  ISSN: 0730-0301
  DOI: 10.1145/1618452.1618498
  BibTeX: Download
• Kainz B., Reiter U., Reiter G., Schmalstieg D.:
  In vivo interactive visualization of four-dimensional blood flow patterns : RRRealtime assessment of volumetric phase contrast MRI
  In: Visual Computer 25 (2009), p. 853-862
  ISSN: 0178-2789
  DOI: 10.1007/s00371-009-0315-7
  BibTeX: Download
• Muehl J., Kainz B., Bornik A., Grabner M., Hauswiesner S., Schmalstieg D.:
  The future of volume graphics in medical virtual reality
  World Congress on Medical Physics and Biomedical Engineering: Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics (DEU, 07/09/2009 - 12/09/2009)
  In: IFMBE Proceedings 2009
  DOI: 10.1007/978-3-642-03882-2_357
  BibTeX: Download
• Muehl JK., Kainz B., Portugaller HR., Stiegler PB., Bauer CH.:
  Computer oriented image acquisition of the liver: Toward a better numerical model for radiofrequency ablation
  31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009 (USA, 02/09/2009 - 06/09/2009)
  In: Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009 2009
  DOI: 10.1109/IEMBS.2009.5334539
  BibTeX: Download

2008

• Kainz B.:
  Automatic differentiation for GPU-accelerated 2D/3D registration
  2008
  BibTeX: Download
• Kainz B., Grabner M., Rüther M.:
  Fast marker based C-Arm pose estimation
  11th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2008 (New York, NY)
  DOI: 10.1007/978-3-540-85990-1_78
  BibTeX: Download
• Reiter G., Reiter U., Kovacs G., Kainz B., Schmidt K., Maier R., Olschewski H., Rienmueller R.:
  Magnetic resonance-derived 3-dimensional blood flow patterns in the main pulmonary artery as a marker of pulmonary hypertension and a measure of elevated mean pulmonary arterial pressure.
  In: Circulation. Cardiovascular genetics 1 (2008), p. 23-30
  ISSN: 1942-3268
  DOI: 10.1161/CIRCIMAGING.108.780247
  BibTeX: Download